Snippets for iqtree 3.1.3 from FreeBSD 150amd64
Sourced from https://pkg-status.freebsd.org/beefy23/data/latest-per-pkg/iqtree/3.1.3/150amd64-default.log.
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/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:519:12: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 519 | double df[N_2], dx[N], dxold[N], f[N+1], space[N]; | ^~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:519:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 519 | double df[N_2], dx[N], dxold[N], f[N+1], space[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:519:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 519 | double df[N_2], dx[N], dxold[N], f[N+1], space[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:519:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 519 | double df[N_2], dx[N], dxold[N], f[N+1], space[N]; | ^~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:519:49: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 519 | double df[N_2], dx[N], dxold[N], f[N+1], space[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:520:18: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 520 | double temp, xh[N], xl[N], rts[N], rts_old[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:520:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 520 | double temp, xh[N], xl[N], rts[N], rts_old[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:520:33: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 520 | double temp, xh[N], xl[N], rts[N], rts_old[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/optimization.cpp:520:45: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 520 | double temp, xh[N], xl[N], rts[N], rts_old[N]; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/utils/tools.cpp:7648:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 7648 | void* addrlist[max_frames+1]; | ^~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelsubst.cpp:187:27: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 187 | double saved_state_lk[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelset.cpp:162:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 162 | double new_eval[num_states*vsize]; | ^~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelset.cpp:163:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 163 | double new_evec[states2*vsize]; | ^~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelset.cpp:164:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 164 | double new_inv_evec[states2*vsize]; | ^~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/partitionmodel.cpp:130:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 130 | size_t state_counts[(*it)->aln->STATE_UNKNOWN+1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/partitionmodel.cpp:146:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 146 | double sum_state_freq[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:327:35: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 327 | double emp_state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:519:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 519 | double eval_exp[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:703:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 703 | double scratch[rank]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:775:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 775 | double eval_exp[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:780:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 780 | double eval_exp_derv1[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:1836:33: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1836 | double saved_state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmarkov.cpp:1871:33: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1871 | double saved_state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmixture.cpp:3755:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3755 | double state_freq[nstate]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmixture.cpp:3814:29: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3814 | double state_freq_class[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmixture.cpp:3845:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3845 | int whichclass[nsites]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmixture.cpp:3846:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3846 | double state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmixture.cpp:3904:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3904 | double state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelmixture.cpp:4427:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 4427 | double state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelpomomixture.cpp:144:39: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 144 | double saved_mutation_rate_matrix[n_alleles*n_alleles]; | ^~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelfactorymixlen.cpp:71:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 71 | double treelen[tree->mixlen]; | ^~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelfactorymixlen.cpp:72:15: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 72 | int index[tree->mixlen]; | ^~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelfactorymixlen.cpp:99:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 99 | double prop[site_rate->getNRate()]; | ^~~~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelfactorymixlen.cpp:110:32: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 110 | ModelSubst *models[nmix]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelpomo.cpp:686:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 686 | unsigned int abs_state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelpomo.cpp:693:17: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 693 | int sum[n_alleles]; | ^~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/model/modelpomo.cpp:758:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 758 | unsigned int abs_state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/alignment/alignment.cpp:211:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 211 | double state_freq[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/alignment/alignment.cpp:277:34: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 277 | double freq_per_sequence[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/alignment/alignment.cpp:283:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 283 | double state_freq_norm[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/alignment/alignment.cpp:1252:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1252 | size_t num_app[num_states]; | ^~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/alignment/alignment.cpp:4790:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 4790 | size_t localStateCount[this->STATE_UNKNOWN+1]; | ^~~~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:128:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 128 | auto dot0 = mul4<0>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:129:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 129 | auto dot1 = mul4<1>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:130:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 130 | auto dot2 = mul4<2>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:131:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 131 | auto dot3 = mul4<3>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:132:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 132 | auto dot4 = mul4<4>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:135:22: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 135 | const auto dot01 = simde_mm256_add_pd(dot0, dot1); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:136:22: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 136 | const auto dot23 = simde_mm256_add_pd(dot2, dot3); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:137:23: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 137 | const auto dot401 = simde_mm256_add_pd(dot4, dot01); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:138:25: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 138 | const auto dot23401 = simde_mm256_add_pd(dot23, dot401); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:140:10: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 140 | return horiz_sum(dot23401); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:57:26: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 57 | const simde__m256d a = simde_mm256_loadu_pd(p1 + lanes); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:58:26: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 58 | const simde__m256d b = simde_mm256_loadu_pd(p2 + lanes); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:59:10: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 59 | return simde_mm256_mul_pd(a, b); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:4492:12: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 4492 | a_ = simde__m256d_to_private(a), | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:4493:12: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 4493 | b_ = simde__m256d_to_private(b); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:4507:12: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 4507 | return simde__m256d_from_private(r_); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:1549:12: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 1549 | a_ = simde__m256d_to_private(a), | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:1550:12: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 1550 | b_ = simde__m256d_to_private(b); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:1564:12: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 1564 | return simde__m256d_from_private(r_); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:77:23: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 77 | simde__m128d vlow = simde_mm256_castpd256_pd128(v); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/model/../alignment/../model/../utils/matrix.h:78:24: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 78 | simde__m128d vhigh = simde_mm256_extractf128_pd(v, 1); // high 128 | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:1996:31: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 1996 | simde__m256d_private a_ = simde__m256d_to_private(a); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/libraries/SIMDe/simde/x86/avx.h:3473:29: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 3473 | simde__m256d_private a_ = simde__m256d_to_private(a); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/iqtreemix.cpp:2281:9: warning: '/*' within block comment [-Wcomment] 2281 | /* | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylosupertreeplen.cpp:805:13: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 805 | int id_eps[part]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylosupertreeunlinked.cpp:329:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 329 | double *ptn_lh[size()]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:61:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 61 | double relative_treelen[mixlen]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:77:33: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 77 | double relative_treelen[mixlen]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:380:28: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 380 | double lower_bound[mixlen]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:381:28: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 381 | double upper_bound[mixlen]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:382:26: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 382 | double variables[mixlen]; | ^~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:398:26: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 398 | double variables[mixlen+1]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:399:28: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 399 | double upper_bound[mixlen+1]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:400:28: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 400 | double lower_bound[mixlen+1]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:401:26: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 401 | bool bound_check[mixlen+1]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:409:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 409 | double grad[mixlen+1], hessian[mixlen*mixlen]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:409:40: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 409 | double grad[mixlen+1], hessian[mixlen*mixlen]; | ^~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:536:15: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 536 | double df[mixlen+1], ddf[mixlen*mixlen]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreemixlen.cpp:536:30: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 536 | double df[mixlen+1], ddf[mixlen*mixlen]; | ^~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreesse.cpp:564:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 564 | double state_freq[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreesse.cpp:1465:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1465 | double state_freq[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreesse.cpp:1767:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1767 | double trans_leaf[nstatesqr]; | ^~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotreesse.cpp:1826:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1826 | double sumlh[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotree.cpp:4990:1: warning: '/*' within block comment [-Wcomment] 4990 | /* void PhyloTree::regraftSubtree(PruningInfo &info, PhyloNode *in_node, PhyloNode *in_dad) { | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotree.cpp:6045:17: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 6045 | bool locked[node->degree()]; | ^~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/booster/prng.c:221:41: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] 221 | double dbl = prng_get_ulong () / (ULONG_MAX + 1.0); | ^~~~~~~~~ ~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:3929:5: warning: '/*' within block comment [-Wcomment] 3929 | /*if (!new_at_node_regions->areDiffFrom(at_node.getTotalLh(), seq_length, | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5223:5: warning: '/*' within block comment [-Wcomment] 5223 | /*subtree->length = best_length; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5536:3: warning: '/*' within block comment [-Wcomment] 5536 | /*Node* next_node_1 = subtree->neighbor; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5555:3: warning: '/*' within block comment [-Wcomment] 5555 | /*sibling_node->neighbor = next_node_2; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5565:5: warning: '/*' within block comment [-Wcomment] 5565 | /*delete sibling_node->total_lh; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5578:3: warning: '/*' within block comment [-Wcomment] 5578 | /*subtree->length = best_length2; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5586:3: warning: '/*' within block comment [-Wcomment] 5586 | /*replacePartialLH(new_root->partial_lh, best_parent_regions); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5597:3: warning: '/*' within block comment [-Wcomment] 5597 | /*if (next_node_1->partial_lh) delete next_node_1->partial_lh; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5603:3: warning: '/*' within block comment [-Wcomment] 5603 | /*if (next_node_2->partial_lh) delete next_node_2->partial_lh; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5617:3: warning: '/*' within block comment [-Wcomment] 5617 | /*if (params->debug) | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5655:3: warning: '/*' within block comment [-Wcomment] 5655 | /*for (Index | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5671:7: warning: '/*' within block comment [-Wcomment] 5671 | /*FOR_NEIGHBOR(node, neighbor_node) | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5800:5: warning: '/*' within block comment [-Wcomment] 5800 | /*old_root_lh = lower_regions->computeAbsoluteLhAtRoot<num_states>( | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5810:5: warning: '/*' within block comment [-Wcomment] 5810 | /*best_parent_lh += best_parent_regions->computeAbsoluteLhAtRoot<num_states>( | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5897:7: warning: '/*' within block comment [-Wcomment] 5897 | /*if (best_parent_regions) delete best_parent_regions; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5959:9: warning: '/*' within block comment [-Wcomment] 5959 | /*if (selected_node->total_lh) delete selected_node->total_lh; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5963:9: warning: '/*' within block comment [-Wcomment] 5963 | /*if (selected_node->mid_branch_lh) delete selected_node->mid_branch_lh; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5978:3: warning: '/*' within block comment [-Wcomment] 5978 | /*if (best_parent_regions) | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:128:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 128 | auto dot0 = mul4<0>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:129:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 129 | auto dot1 = mul4<1>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:130:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 130 | auto dot2 = mul4<2>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:131:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 131 | auto dot3 = mul4<3>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:132:15: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 132 | auto dot4 = mul4<4>(p1, p2); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:135:22: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 135 | const auto dot01 = simde_mm256_add_pd(dot0, dot1); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:136:22: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 136 | const auto dot23 = simde_mm256_add_pd(dot2, dot3); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:137:23: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 137 | const auto dot401 = simde_mm256_add_pd(dot4, dot01); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:138:25: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 138 | const auto dot23401 = simde_mm256_add_pd(dot23, dot401); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:140:10: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 140 | return horiz_sum(dot23401); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:57:26: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 57 | const simde__m256d a = simde_mm256_loadu_pd(p1 + lanes); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:58:26: warning: AVX vector return of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 58 | const simde__m256d b = simde_mm256_loadu_pd(p2 + lanes); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:59:10: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 59 | return simde_mm256_mul_pd(a, b); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:77:23: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 77 | simde__m128d vlow = simde_mm256_castpd256_pd128(v); | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/../alignment/../model/../utils/matrix.h:78:24: warning: AVX vector argument of type 'simde__m256d' (vector of 4 'simde_float64' values) without 'avx' enabled changes the ABI [-Wpsabi] 78 | simde__m128d vhigh = simde_mm256_extractf128_pd(v, 1); // high 128 | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:908:19: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 908 | size_t cat_id[ncat_mix], mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:908:47: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 908 | size_t cat_id[ncat_mix], mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:908:67: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 908 | size_t cat_id[ncat_mix], mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:909:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 909 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:909:63: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 909 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:941:28: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 941 | double mat[nstatesqr]; | ^~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:1064:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1064 | double expchild[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:1325:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1325 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:1325:63: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1325 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:1360:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1360 | double len_children[ncat*(node->degree()-1)]; // +1 in case num_leaves = 0 | ^~~~~~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2074:29: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2074 | size_t mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2074:49: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2074 | size_t mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2196:33: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2196 | UBYTE sum_scale[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2290:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2290 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix], cat_id[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2290:63: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2290 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix], cat_id[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2290:81: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2290 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix], cat_id[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2310:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2310 | double cat_rate[ncat]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2311:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2311 | double cat_prop[ncat]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2726:29: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2726 | size_t mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2726:49: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2726 | size_t mix_addr_nstates[ncat_mix], mix_addr[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2727:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2727 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2727:63: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2727 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2735:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2735 | double cat_length[ncat]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:2736:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 2736 | double cat_prop[ncat]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:3078:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3078 | UBYTE sum_scale[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:3320:36: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3320 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:3320:63: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3320 | size_t mix_addr_nstates_malign[ncat_mix], mix_addr_malign[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:3332:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3332 | double cat_length[ncat]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnew.h:3333:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 3333 | double cat_prop[ncat]; | ^~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnonrev.h:646:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 646 | double state_freq[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnonrev.h:1122:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1122 | double state_freq[nstates]; | ^~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnonrev.h:1419:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 1419 | UBYTE sum_scale[ncat_mix]; | ^~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnonrev.h:743:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 743 | UBYTE min_scale_vec[VectorClass::size()]; | ^~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylokernelnonrev.h:893:37: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 893 | UBYTE min_scale_vec[VectorClass::size()]; | ^~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:109:25: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 109 | double partition_lh[stree->size()]; | ^~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:14: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:27: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:34: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:40: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:46: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:52: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:58: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/treetesting.cpp:738:64: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 738 | double s[kk], r[kk],c[kk], b[kk],z[kk],p[kk],d[kk],g[kk],h[kk]; | ^~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:686:31: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 686 | unsigned int codon_counts[orig_aln->num_states]; | ^~~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:694:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 694 | double codon_freq[orig_aln->num_states]; | ^~~~~~~~~~~~~~~~~~~~ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6928:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 6928 | case SEQ_CODON: return ",F1X4,F3X4"; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6929:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 6929 | case SEQ_MORPH: return "FQ"; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6930:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 6930 | case SEQ_PROTEIN: return ",FO"; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6931:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 6931 | default: return "FO"; | ^ -
/wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/timetree.cpp:320:16: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 320 | char *argv[argc]; | ^~~~