Snippets for r:affyio 1.82.0 from Fedora i686

Sourced from https://kojipkgs.fedoraproject.org/packages/R-affyio/1.82.0/1.fc46/data/logs/i686/build.log.

• read_abatch.c:3410:3: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
   3410 |   strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1);
        |   ^
  

• read_abatch.c:2661:3: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
   2661 |   strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1);
        |   ^
  

• read_bpmap.c:849:39: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=]
    849 |       error("Unable to open the file %s",filename);
        |                                      ~^  ~~~~~~~~
        |                                       |  |
        |                                       |  SEXP {aka struct SEXPREC *}
        |                                       char *
  

• read_bpmap.c:698:27: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
    698 |           sprintf(buf, "%d", j+1);
        |                           ^
  

• read_bpmap.c:655:27: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
    655 |           sprintf(buf, "%d", j+1);
        |                           ^
  

• read_bpmap.c:603:25: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
    603 |         sprintf(buf, "%d", j+1);
        |                         ^
  

• read_celfile_generic.c:272:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
    272 |   strncpy(header_info->AlgorithmParameters,"Percentile:",11);
        |   ^
  

• read_celfile_generic.c:294:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
    294 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11);
        |   ^
  

• read_celfile_generic.c:315:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
    315 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12);
        |   ^
  

• read_celfile_generic.c:336:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
    336 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11);
        |   ^
  

• read_celfile_generic.c:357:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
    357 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11);
        |   ^
  

• read_celfile_generic.c:378:3: warning: ‘strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation]
    378 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14);
        |   ^
  

• read_celfile_generic.c:399:3: warning: ‘strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
    399 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17);
        |   ^
  

• read_celfile_generic.c:420:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
    420 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18);
        |   ^
  

• read_celfile_generic.c:441:3: warning: ‘strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation]
    441 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26);
        |   ^
  

• read_celfile_generic.c:464:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
    464 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18);
        |   ^
  

• read_celfile_generic.c:488:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
    488 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20);
        |   ^
  

• read_celfile_generic.c:510:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
    510 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20);
        |   ^
  

• read_celfile_generic.c:532:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
    532 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12);
        |   ^
  

• read_celfile_generic.c:553:3: warning: ‘strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation]
    553 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16);
        |   ^
  

• read_celfile_generic.c:575:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
    575 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11);
        |   ^
  

• read_celfile_generic.c:597:3: warning: ‘strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation]
    597 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8);
        |   ^
  

• read_celfile_generic.c:1270:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
   1270 |   strncpy(header_info->AlgorithmParameters,"Percentile:",11);
        |   ^
  

• read_celfile_generic.c:1292:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
   1292 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11);
        |   ^
  

• read_celfile_generic.c:1313:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
   1313 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12);
        |   ^
  

• read_celfile_generic.c:1334:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
   1334 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11);
        |   ^
  

• read_celfile_generic.c:1355:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
   1355 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11);
        |   ^
  

• read_celfile_generic.c:1376:3: warning: ‘strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation]
   1376 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14);
        |   ^
  

• read_celfile_generic.c:1397:3: warning: ‘strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
   1397 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17);
        |   ^
  

• read_celfile_generic.c:1418:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
   1418 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18);
        |   ^
  

• read_celfile_generic.c:1439:3: warning: ‘strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation]
   1439 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26);
        |   ^
  

• read_celfile_generic.c:1462:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
   1462 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18);
        |   ^
  

• read_celfile_generic.c:1486:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
   1486 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20);
        |   ^
  

• read_celfile_generic.c:1508:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
   1508 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20);
        |   ^
  

• read_celfile_generic.c:1530:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
   1530 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12);
        |   ^
  

• read_celfile_generic.c:1551:3: warning: ‘strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation]
   1551 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16);
        |   ^
  

• read_celfile_generic.c:1573:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
   1573 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11);
        |   ^
  

• read_celfile_generic.c:1595:3: warning: ‘strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation]
   1595 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8);
        |   ^
  

• read_generic.c:1293:37: warning: format ‘%f’ expects argument of type ‘double’, but argument 2 has type ‘int’ [-Wformat=]
   1293 |     Rprintf("Its a float  value is %f\n",temp32);
        |                                    ~^    ~~~~~~
        |                                     |    |
        |                                     |    int
        |                                     double
        |                                    %d
  

• read_pgf.c:363:12: warning: ‘token_ends_with’ defined but not used [-Wunused-function]
    363 | static int token_ends_with(char *token, char *ends_in){
        |            ^~~~~~~~~~~~~~~
  

•   read_abatch.c:3410:3: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  

•   read_abatch.c:2661:3: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  

•   read_bpmap.c:849:39: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=]
  

•   read_bpmap.c:698:27: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  

•   read_bpmap.c:655:27: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  

•   read_bpmap.c:603:25: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  

•   read_celfile_generic.c:272:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:294:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:315:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:336:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:357:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:378:3: warning: ‘strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:399:3: warning: ‘strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:420:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:441:3: warning: ‘strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:464:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:488:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:510:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:532:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:553:3: warning: ‘strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:575:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:597:3: warning: ‘strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1270:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1292:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1313:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1334:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1355:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1376:3: warning: ‘strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1397:3: warning: ‘strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1418:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1439:3: warning: ‘strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1462:3: warning: ‘strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1486:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1508:3: warning: ‘strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1530:3: warning: ‘strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1551:3: warning: ‘strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1573:3: warning: ‘strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_celfile_generic.c:1595:3: warning: ‘strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation]
  

•   read_generic.c:1293:37: warning: format ‘%f’ expects argument of type ‘double’, but argument 2 has type ‘int’ [-Wformat=]