Snippets for iqtree 3.1.3 from FreeBSD 151arm64

Sourced from https://pkg-status.freebsd.org/ampere5/data/latest-per-pkg/iqtree/3.1.3/151arm64-default.log.

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/iqtreemix.cpp:2281:9: warning: '/*' within block comment [-Wcomment]
   2281 |         /*
        |         ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/tree/phylotree.cpp:4990:1: warning: '/*' within block comment [-Wcomment]
   4990 | /* void PhyloTree::regraftSubtree(PruningInfo &info, PhyloNode *in_node, PhyloNode *in_dad) {
        | ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/booster/tree.c:1070:10: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
   1070 |                         if (u == EOF) break; /* shouldn't happen anyway */
        |                             ~ ^  ~~~
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/booster/tree.c:1084:9: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
   1084 |                 if (u == EOF) { big_string[index_in_string] = '\0'; return 0; } /* error code telling that no tree has been read properly */
        |                     ~ ^  ~~~
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/booster/prng.c:221:41: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]
    221 |       double dbl = prng_get_ulong () / (ULONG_MAX + 1.0);
        |                                         ^~~~~~~~~ ~
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:3929:5: warning: '/*' within block comment [-Wcomment]
   3929 |     /*if (!new_at_node_regions->areDiffFrom(at_node.getTotalLh(), seq_length,
        |     ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5223:5: warning: '/*' within block comment [-Wcomment]
   5223 |     /*subtree->length = best_length;
        |     ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5536:3: warning: '/*' within block comment [-Wcomment]
   5536 |   /*Node* next_node_1 = subtree->neighbor;
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5555:3: warning: '/*' within block comment [-Wcomment]
   5555 |   /*sibling_node->neighbor = next_node_2;
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5565:5: warning: '/*' within block comment [-Wcomment]
   5565 |     /*delete sibling_node->total_lh;
        |     ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5578:3: warning: '/*' within block comment [-Wcomment]
   5578 |   /*subtree->length = best_length2;
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5586:3: warning: '/*' within block comment [-Wcomment]
   5586 |   /*replacePartialLH(new_root->partial_lh, best_parent_regions);
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5597:3: warning: '/*' within block comment [-Wcomment]
   5597 |   /*if (next_node_1->partial_lh) delete next_node_1->partial_lh;
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5603:3: warning: '/*' within block comment [-Wcomment]
   5603 |   /*if (next_node_2->partial_lh) delete next_node_2->partial_lh;
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5617:3: warning: '/*' within block comment [-Wcomment]
   5617 |   /*if (params->debug)
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5655:3: warning: '/*' within block comment [-Wcomment]
   5655 |   /*for (Index
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5671:7: warning: '/*' within block comment [-Wcomment]
   5671 |       /*FOR_NEIGHBOR(node, neighbor_node)
        |       ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5800:5: warning: '/*' within block comment [-Wcomment]
   5800 |     /*old_root_lh = lower_regions->computeAbsoluteLhAtRoot<num_states>(
        |     ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5810:5: warning: '/*' within block comment [-Wcomment]
   5810 |     /*best_parent_lh += best_parent_regions->computeAbsoluteLhAtRoot<num_states>(
        |     ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5897:7: warning: '/*' within block comment [-Wcomment]
   5897 |       /*if (best_parent_regions) delete best_parent_regions;
        |       ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5959:9: warning: '/*' within block comment [-Wcomment]
   5959 |         /*if (selected_node->total_lh) delete selected_node->total_lh;
        |         ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5963:9: warning: '/*' within block comment [-Wcomment]
   5963 |         /*if (selected_node->mid_branch_lh) delete selected_node->mid_branch_lh;
        |         ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/cmaple/tree/tree.cpp:5978:3: warning: '/*' within block comment [-Wcomment]
   5978 |   /*if (best_parent_regions)
        |   ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/lsd2/src/readData.cpp:54:39: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
     54 |         else if (c!='(' && c!=',' && c!=-1 && c!=';' && c!='\n'){
        |                                      ~^ ~~
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/lsd2/src/utils.cpp:2616:39: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
   2616 |         else if (c!='(' && c!=',' && c!=-1 && c!=';' && c!='\n'){
        |                                      ~^ ~~
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6928:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
   6928 |         case SEQ_CODON:   return ",F1X4,F3X4";
        |                                  ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6929:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
   6929 |         case SEQ_MORPH:   return "FQ";
        |                                  ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6930:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
   6930 |         case SEQ_PROTEIN: return ",FO";
        |                                  ^
  

• /wrkdirs/usr/ports/biology/iqtree/work/iqtree3-3.1.3/main/phylotesting.cpp:6931:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
   6931 |         default:          return "FO";
        |                                  ^